Reference Manual Table of Contents


	Reference Manual F. Links to and from FlyBase F.1. FlyBase Identifier Numbers F.2. Links to external databases F.2.1. FlyBase-curated links F.2.2. FlyBase linkouts Reference Manual G. FlyBase Documentation G.1. Nontraditional alleles G.1.1. Alleles of reporter genes G.1.2. Alleles of ectopically expressed Drosophila gene products G.1.3. Alleles of ectopically expressed non-Drosophila effector products G.1.4. Classical alleles engineered into transgene constructs, including rescue constructs G.2. Controlled vocabularies used by FlyBase G.3. Classification of Gene Products using Gene Ontology (GO) terms G.3.1. FlyBase GO data G.3.2. Evidence G.3.2.1. Use of evidence codes G.3.2.2. Use of Qualifiers G.4. Computed Feature type of genes G.5. Computed cytological data G.5.1. Computed cytological locations of objects which have been mapped to the genome G.5.2. Computed cytological location of insertions based on the gene in which it is inserted G.5.3. Computed cytological locations of objects based upon data from the literature G.5.4. Tools G.6. Personal communications to FlyBase G.7. Gene Model Annotation Guidelines G.7.1. Criteria for Annotation G.7.2. Evidence used for gene model annotation as of March 2007 G.7.3. Exceptional cases G.7.4. Assessment of supporting data G.7.5. Current list of "canned" annotation comments G.8. What does the annotation evidence score mean? Also see the report help pages

Reference Manual F. Links to and from FlyBase
- F.1. FlyBase Identifier Numbers
- F.2. Links to external databases
- - F.2.1. FlyBase-curated links
  - F.2.2. FlyBase linkouts
Reference Manual G. FlyBase Documentation
- G.1. Nontraditional alleles
- - G.1.1. Alleles of reporter genes
  - G.1.2. Alleles of ectopically expressed Drosophila gene products
  - G.1.3. Alleles of ectopically expressed non-Drosophila effector products
  - G.1.4. Classical alleles engineered into transgene constructs, including rescue constructs
- G.2. Controlled vocabularies used by FlyBase
- G.3. Classification of Gene Products using Gene Ontology (GO) terms
- - G.3.1. FlyBase GO data
  - G.3.2. Evidence
  - - G.3.2.1. Use of evidence codes
    - G.3.2.2. Use of Qualifiers
- G.4. Computed Feature type of genes
- G.5. Computed cytological data
- - G.5.1. Computed cytological locations of objects which have been mapped to the genome
  - G.5.2. Computed cytological location of insertions based on the gene in which it is inserted
  - G.5.3. Computed cytological locations of objects based upon data from the literature
  - G.5.4. Tools
- G.6. Personal communications to FlyBase
- G.7. Gene Model Annotation Guidelines
- - G.7.1. Criteria for Annotation
  - G.7.2. Evidence used for gene model annotation as of March 2007
  - G.7.3. Exceptional cases
  - G.7.4. Assessment of supporting data
  - G.7.5. Current list of "canned" annotation comments
- G.8. What does the annotation evidence score mean?
Also see the report help pages